The first thing I did was change the rims and tires. Looks like a mail jeep with those steelies and road tires. Painting them black will help a lot! Just find a tire that you like the tread pattern, go a little taller and wider, and you will be set! Good luck!
The picture thing doesn't make any sense; they have to send the pictures to Ford to get the OK to replace your top under warranty. I've had mine replaced twice.
JB Weld will work. There are different epoxies out there that might be perfect for the material that is used to make that top, bad part to match it, you will need to paint the top or wrap it in vinyl.