I had the same issue as far as the weather stripping. The mechanic put the top back on and the stripping wasn’t aligned. So I took the top off and aligned it myself.
I’ve got the same year and model bronco, and I’ve had water leaking in the middle of the two caps. I took it to the dealership & ford knows about it, however it’s not a recall as of yet. They replaced the weather stripping and added a sealer. I haven’t gone to a car wash yet since it’s been...